Data Analysis

By default, we will perform de-multiplexing and base-calling and will return fastq files. For samples generated using scRNAseq kits from 10x Genomics, we will provide demultiplexed fastq files using cell ranger mkfastq. For samples generated using other 10x Genomics kits, we will provide BCL files.

Data analysis will begin automatically after your run finishes and can take up to two days. Once analysis is complete, we will email a link for you to retrieve your files. We keep data for 60 days after analysis is complete.

We recommend that all FAS researchers meet with the Informatics team before submitting samples. They offer tools, training, and support to enable additional analysis.