#  NGS Data Analysis 

 



 ##  

  expand\_more  

 
  

 

By default, we will perform de-multiplexing and base-calling and return fastq files. BCL files are also available for download, though most researchers choose not to take them since they require a lot of storage space. For samples generated using most kits from 10x Genomics, we will provide demultiplexed fastq files and count results for human and mouse samples. If you have a different reference, reach out.

Data analysis will begin automatically after your run finishes and can take up to two days. Once the analysis is complete, we will upload a link to your request in LockBox for you to retrieve your files. For help accessing data, see [these instructions](https://informatics.fas.harvard.edu/resources/tutorials/how-can-i-download-my-sequencing-data/).

We keep data for 90 days after the analysis is complete.

We recommend that all FAS researchers meet with the [Informatics team](http://informatics.fas.harvard.edu/) before submitting samples. They offer tools, training, and support to enable additional analysis.